3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04022

Details:

PFam ID : PF04022

PFam Domain Description : Staphylocoagulase repeat

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 16

Average sequence length: 25.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04022	B1YA94_THENV_6_32	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04022	Q9KW82_STAAU_137_163	100

Sequence based PCA Plot of the family - PF04022 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay