3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03297

Details:

PFam ID : PF03297

PFam Domain Description : S25 ribosomal protein

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 185

Average sequence length: 97.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03297	Q2KKZ0_SINCH_1_41	54.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03297	D7L1U8_ARALL_6_78	100

Sequence based PCA Plot of the family - PF03297 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay