3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04686

Details:

PFam ID : PF04686

PFam Domain Description : Streptomyces sporulation and cell division protein, SsgA

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 145

Average sequence length: 97.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04686	D6XC44_9ACTO_22_81	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04686	D9X665_STRVR_22_127	100

Sequence based PCA Plot of the family - PF04686 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=17
Motif2 Start=32 Length=8
Motif3 Start=51 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay