3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05430

Details:

PFam ID : PF05430

PFam Domain Description : S-adenosyl-L-methionine-dependent methyltransferase

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 523

Average sequence length: 120.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05430	D6W9E0_TRICA_8_329	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05430	MNMC_SACD2_120_264	100

Sequence based PCA Plot of the family - PF05430 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=19 Length=8
Motif3 Start=117 Length=11
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay