3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00836

Details:

PFam ID : PF00836

PFam Domain Description : Stathmin family

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 70

Average sequence length: 124.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00836	B5G334_TAEGU_4_67	47.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00836	B3S280_TRIAD_153_294	98.5

Sequence based PCA Plot of the family - PF00836 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay