3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04434

Details:

PFam ID : PF04434

PFam Domain Description : SWIM zinc finger

Number of Sequence in 50% Dataset : 146

Number of Sequence in Full Dataset : 1198

Average sequence length: 38.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04434	B9FEG5_ORYSJ_241_335	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04434	E3D0T3_9BACT_223_275	95.1

Sequence based PCA Plot of the family - PF04434 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay