3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04672

Details:

PFam ID : PF04672

PFam Domain Description : S-adenosyl methyltransferase

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 470

Average sequence length: 249.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04672	D3DDT8_9ACTO_50_101	60.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04672	Q93ME7_AMYMD_2_282	100

Sequence based PCA Plot of the family - PF04672 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=7 Length=17
Motif2 Start=58 Length=14
Motif3 Start=222 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay