3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10326

Details:

PFam ID : PF10326

PFam Domain Description : Serpentine type 7TM GPCR chemoreceptor Str

Number of Sequence in 50% Dataset : 278

Number of Sequence in Full Dataset : 769

Average sequence length: 248.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10326	A8XDS8_CAEBR_10_356	67.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10326	Q22261_CAEEL_5_202	100

Sequence based PCA Plot of the family - PF10326 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=39 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay