3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13630

Details:

PFam ID : PF13630

PFam Domain Description : SdpI/YhfL protein family

Number of Sequence in 50% Dataset : 162

Number of Sequence in Full Dataset : 409

Average sequence length: 74.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13630	C7MPP6_SACVD_43_120	80.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13630	C5QNH8_STAEP_12_98	100

Sequence based PCA Plot of the family - PF13630 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=32 Length=8
Motif2 Start=1 Length=20
Motif3 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay