3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06638

Details:

PFam ID : PF06638

PFam Domain Description : Strabismus protein

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 56

Average sequence length: 396.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06638	E4YC84_OIKDI_1_202	80.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06638	F2WMR6_SCHMD_105_643	100

Sequence based PCA Plot of the family - PF06638 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=172 Length=8
Motif4 Start=27 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay