3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04810

Details:

PFam ID : PF04810

PFam Domain Description : Sec23/Sec24 zinc finger

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 404

Average sequence length: 39.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04810	A0DLP1_PARTE_45_90	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04810	A2D7D6_TRIVA_77_114	99.5

Sequence based PCA Plot of the family - PF04810 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=14
Motif2 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay