3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04722

Details:

PFam ID : PF04722

PFam Domain Description : Ssu72-like protein

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 124

Average sequence length: 185.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04722	A2FVC5_TRIVA_5_200	69.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04722	A2FVC5_TRIVA_5_200	100

Sequence based PCA Plot of the family - PF04722 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=134 Length=14
Motif2 Start=13 Length=8
Motif3 Start=42 Length=20
Motif4 Start=88 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay