3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10324

Details:

PFam ID : PF10324

PFam Domain Description : Serpentine type 7TM GPCR chemoreceptor Srw

Number of Sequence in 50% Dataset : 332

Number of Sequence in Full Dataset : 589

Average sequence length: 236.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10324	B6IG44_CAEBR_7_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10324	E3CU61_CAEBR_49_388	100

Sequence based PCA Plot of the family - PF10324 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=35 Length=8
Motif3 Start=65 Length=8
Motif4 Start=14 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay