3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03467

Details:

PFam ID : PF03467

PFam Domain Description : Smg-4/UPF3 family

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 160

Average sequence length: 159.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03467	C4QWH4_PICPG_12_183	87.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03467	E6ZJY2_9BASI_113_341	100

Sequence based PCA Plot of the family - PF03467 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=97 Length=8
Motif2 Start=216 Length=11
Motif3 Start=11 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay