3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12820

Details:

PFam ID : PF12820

PFam Domain Description : Serine-rich domain associated with BRCT

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 213

Average sequence length: 156.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12820	Q28HW6_XENTR_321_470	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12820	D8LAE7_CENSE_76_173	98.5

Sequence based PCA Plot of the family - PF12820 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay