3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06487

Details:

PFam ID : PF06487

PFam Domain Description : Sin3 associated polypeptide p18 (SAP18)

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 112

Average sequence length: 128.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06487	YQFD_SCHPO_15_136	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06487	A6SR20_BOTFB_5_156	100

Sequence based PCA Plot of the family - PF06487 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=75 Length=8
Motif3 Start=142 Length=11
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay