3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09851

Details:

PFam ID : PF09851

PFam Domain Description : Short C-terminal domain

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 935

Average sequence length: 30.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09851	D2R0L9_PIRSD_83_244	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09851	D1N0Y0_9BACT_120_150	71

Sequence based PCA Plot of the family - PF09851 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay