3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03803

Details:

PFam ID : PF03803

PFam Domain Description : Scramblase

Number of Sequence in 50% Dataset : 129

Number of Sequence in Full Dataset : 329

Average sequence length: 194.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03803	CITG_HAEDU_1_35	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03803	C5E133_ZYGRC_36_150	100

Sequence based PCA Plot of the family - PF03803 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=191 Length=8
Motif3 Start=39 Length=8
Motif4 Start=208 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay