3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10321

Details:

PFam ID : PF10321

PFam Domain Description : Serpentine type 7TM GPCR chemoreceptor Srt

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 186

Average sequence length: 256.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10321	O16492_CAEEL_6_301	72.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10321	O17238_CAEEL_9_317	98.3

Sequence based PCA Plot of the family - PF10321 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=170 Length=8
Motif2 Start=8 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay