3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00448

Details:

PFam ID : PF00448

PFam Domain Description : SRP54-type protein, GTPase domain

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 2481

Average sequence length: 192.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00448	D2UZ80_NAEGR_73_155	70.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00448	B9C032_9BURK_495_553	100

Sequence based PCA Plot of the family - PF00448 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=53 Length=8
Motif2 Start=41 Length=8
Motif3 Start=67 Length=8
Motif4 Start=9 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay