3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07712

Details:

PFam ID : PF07712

PFam Domain Description : Stress up-regulated Nod 19

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 33

Average sequence length: 342.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07712	A5AZN1_VITVI_24_202	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07712	A9TKN5_PHYPA_6_394	100

Sequence based PCA Plot of the family - PF07712 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=26 Length=8
Motif3 Start=65 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay