3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00084

Details:

PFam ID : PF00084

PFam Domain Description : Sushi domain (SCR repeat)

Number of Sequence in 50% Dataset : 868

Number of Sequence in Full Dataset : 4510

Average sequence length: 56.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00084	E4XWX0_OIKDI_1800_1870	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00084	B7PGE4_IXOSC_107_166	99.8

Sequence based PCA Plot of the family - PF00084 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay