3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05895

Details:

PFam ID : PF05895

PFam Domain Description : Siphovirus protein of unknown function (DUF859)

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 49

Average sequence length: 437.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05895	B3Z224_BACCE_209_364	78.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05895	C8NHV0_9LACT_1_644	100

Sequence based PCA Plot of the family - PF05895 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=122 Length=8
Motif3 Start=307 Length=8
Motif4 Start=87 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay