3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03348

Details:

PFam ID : PF03348

PFam Domain Description : Serine incorporator (Serinc)

Number of Sequence in 50% Dataset : 103

Number of Sequence in Full Dataset : 318

Average sequence length: 307.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03348	E3KTV2_PUCGT_29_512	81.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03348	A8J4U4_CHLRE_8_172	99.6

Sequence based PCA Plot of the family - PF03348 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=54 Length=8
Motif3 Start=140 Length=11
Motif4 Start=91 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay