3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04700

Details:

PFam ID : PF04700

PFam Domain Description : Structural glycoprotein p40/gp41 conserved region

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 30

Average sequence length: 183

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04700	B2BR13_CRAGI_1_34	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04700	Q9YMN9_NPVLD_68_256	100

Sequence based PCA Plot of the family - PF04700 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay