3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12559

Details:

PFam ID : PF12559

PFam Domain Description : Serine endopeptidase inhibitors

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 29

Average sequence length: 47.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12559	D5GUZ2_9CHRO_1_38	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12559	D7W6Y0_9FLAO_1_68	100

Sequence based PCA Plot of the family - PF12559 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=8
Motif2 Start=4 Length=8
Motif3 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay