3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08628

Details:

PFam ID : PF08628

PFam Domain Description : Sorting nexin C terminal

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 191

Average sequence length: 111.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08628	Q013E0_OSTTA_592_692	72.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08628	Q4PEJ9_USTMA_1181_1302	100

Sequence based PCA Plot of the family - PF08628 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=58 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay