3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13457

Details:

PFam ID : PF13457

PFam Domain Description : SH3-like domain

Number of Sequence in 50% Dataset : 104

Number of Sequence in Full Dataset : 299

Average sequence length: 74.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13457	A0NI60_OENOE_1_37	9.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13457	E3YTD6_9LIST_1_50	96.6

Sequence based PCA Plot of the family - PF13457 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay