3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08033

Details:

PFam ID : PF08033

PFam Domain Description : Sec23/Sec24 beta-sandwich domain

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 430

Average sequence length: 92.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08033	A1DKC6_NEOFI_403_469	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08033	B8BQQ2_THAPS_960_1062	100

Sequence based PCA Plot of the family - PF08033 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=89 Length=8
Motif3 Start=106 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay