3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03959

Details:

PFam ID : PF03959

PFam Domain Description : Serine hydrolase (FSH1)

Number of Sequence in 50% Dataset : 252

Number of Sequence in Full Dataset : 497

Average sequence length: 204.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03959	C5N284_STAA3_2_43	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03959	A8J9Y5_CHLRE_97_199	100

Sequence based PCA Plot of the family - PF03959 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=116 Length=11
Motif2 Start=225 Length=11
Motif3 Start=261 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay