3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09580

Details:

PFam ID : PF09580

PFam Domain Description : Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 200

Average sequence length: 157.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09580	D3G0R6_BACPE_9_206	37.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09580	C3DKN0_BACTS_1_71	100

Sequence based PCA Plot of the family - PF09580 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay