3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13580

Details:

PFam ID : PF13580

PFam Domain Description : SIS domain

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 1236

Average sequence length: 132.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13580	D4AUD6_ARTBC_46_176	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13580	D4HT79_LEPIN_12_165	100

Sequence based PCA Plot of the family - PF13580 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=112 Length=8
Motif3 Start=132 Length=8
Motif4 Start=36 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay