3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12108

Details:

PFam ID : PF12108

PFam Domain Description : Splicing factor SF3a60 binding domain

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 85

Average sequence length: 27.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12108	Q7QBN1_ANOGA_72_99	62.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12108	A8NX17_COPC7_73_102	95.2

Sequence based PCA Plot of the family - PF12108 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay