3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03776

Details:

PFam ID : PF03776

PFam Domain Description : Septum formation topological specificity factor MinE

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 420

Average sequence length: 68.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03776	E1NSN7_9LACO_122_199	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03776	C5CEN1_KOSOT_16_92	100

Sequence based PCA Plot of the family - PF03776 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=5 Length=17
Motif3 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay