3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04144

Details:

PFam ID : PF04144

PFam Domain Description : SCAMP family

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 185

Average sequence length: 156.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04144	B9F9F8_ORYSJ_67_141	96.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04144	D8LM64_ECTSI_107_282	100

Sequence based PCA Plot of the family - PF04144 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=78 Length=8
Motif2 Start=165 Length=8
Motif3 Start=2 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay