3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07333

Details:

PFam ID : PF07333

PFam Domain Description : S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 101

Average sequence length: 55.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07333	D7MS17_ARALL_19_88	11.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07333	D7KIK7_ARALL_23_93	92

Sequence based PCA Plot of the family - PF07333 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay