3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01235

Details:

PFam ID : PF01235

PFam Domain Description : Sodium:alanine symporter family

Number of Sequence in 50% Dataset : 116

Number of Sequence in Full Dataset : 1450

Average sequence length: 396.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01235	Q7NVW8_CHRVO_38_125	66.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01235	C0W9G0_9FIRM_39_480	100

Sequence based PCA Plot of the family - PF01235 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=44 Length=8
Motif3 Start=16 Length=24

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay