3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11978

Details:

PFam ID : PF11978

PFam Domain Description : Shoulder domain

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 43

Average sequence length: 111.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11978	A6FXE2_9DELT_535_646	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11978	D2V5B9_NAEGR_291_415	100

Sequence based PCA Plot of the family - PF11978 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=73 Length=8
Motif4 Start=37 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay