3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04439

Details:

PFam ID : PF04439

PFam Domain Description : Streptomycin adenylyltransferase

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 152

Average sequence length: 247.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04439	D4MM83_9FIRM_1_117	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04439	D1CAM8_SPHTD_1_293	100

Sequence based PCA Plot of the family - PF04439 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=10 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay