3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04927

Details:

PFam ID : PF04927

PFam Domain Description : Seed maturation protein

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 163

Average sequence length: 58.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04927	A3AMN5_ORYSJ_18_52	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04927	A2QTW8_ASPNC_61_116	100

Sequence based PCA Plot of the family - PF04927 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay