3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02258

Details:

PFam ID : PF02258

PFam Domain Description : Shiga-like toxin beta subunit

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 11

Average sequence length: 58.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02258	D6ZE05_SEGRD_403_468	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02258	VP07_BPAPS_25_100	100

Sequence based PCA Plot of the family - PF02258 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay