3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04573

Details:

PFam ID : PF04573

PFam Domain Description : Signal peptidase subunit

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 210

Average sequence length: 138.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04573	A0BS79_PARTE_1_185	89.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04573	A0BS79_PARTE_1_185	100

Sequence based PCA Plot of the family - PF04573 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=83 Length=8
Motif3 Start=159 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay