3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00158

Details:

PFam ID : PF00158

PFam Domain Description : Sigma-54 interaction domain

Number of Sequence in 50% Dataset : 275

Number of Sequence in Full Dataset : 6342

Average sequence length: 160.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00158	F0GJZ2_9BURK_146_180	79.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00158	C7IQC7_THEET_1_92	100

Sequence based PCA Plot of the family - PF00158 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=11
Motif2 Start=65 Length=28
Motif3 Start=36 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay