3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00893

Details:

PFam ID : PF00893

PFam Domain Description : Small Multidrug Resistance protein

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 1445

Average sequence length: 92.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00893	C6RM55_ACIRA_1_50	76.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00893	Q75V07_STAWA_1_58	100

Sequence based PCA Plot of the family - PF00893 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=17
Motif2 Start=42 Length=8
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay