3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03612

Details:

PFam ID : PF03612

PFam Domain Description : Sorbitol phosphotransferase enzyme II N-terminus

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 133

Average sequence length: 167.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03612	A4AIG2_9ACTN_9_205	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03612	A4AIG2_9ACTN_9_205	100

Sequence based PCA Plot of the family - PF03612 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=69 Length=19
Motif3 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay