3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12135

Details:

PFam ID : PF12135

PFam Domain Description : Sialidase enzyme penultimate C terminal domain

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 35

Average sequence length: 23.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12135	Q967A5_LEIMA_1_78	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12135	Q4YTY6_PLABA_1951_1974	79

Sequence based PCA Plot of the family - PF12135 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay