3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12383

Details:

PFam ID : PF12383

PFam Domain Description : Severe acute respiratory syndrome coronavirus 3b protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 2

Average sequence length: 76.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12383	Q5Y975_9VIRU_619_848	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12383	D2E2T6_9BETC_1_153	100

Sequence based PCA Plot of the family - PF12383 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay