3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04552

Details:

PFam ID : PF04552

PFam Domain Description : Sigma-54, DNA binding domain

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 629

Average sequence length: 156.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04552	C0ATF5_9ENTR_1_50	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04552	C8PMB8_9SPIO_324_499	100

Sequence based PCA Plot of the family - PF04552 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=8
Motif3 Start=44 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay