3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10342

Details:

PFam ID : PF10342

PFam Domain Description : Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family

Number of Sequence in 50% Dataset : 146

Number of Sequence in Full Dataset : 396

Average sequence length: 94.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10342	E2M6H9_MONPE_21_68	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10342	Q8QKV3_ESV1_156_249	99.4

Sequence based PCA Plot of the family - PF10342 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay