3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01172

Details:

PFam ID : PF01172

PFam Domain Description : Shwachman-Bodian-Diamond syndrome (SBDS) protein

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 279

Average sequence length: 91.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01172	Q4JI01_ICTPU_1_53	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01172	D8LYD2_BLAHO_4_91	100

Sequence based PCA Plot of the family - PF01172 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=63 Length=8
Motif4 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay